RetrogeneDB ID: | retro_cpor_1472 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_9:29838396..29838764(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000014693 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75. % |
Parental protein coverage: | 91.11 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | ARVIIEKYYTRLGNDFHTNKR-VCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERR |
ARVII..YY..LGNDFH.....VCEEI.II.SKKL...IAGYV.HLMK.IQRGPVRG.SIKLQEEERER. | |
Retrocopy | ARVIIKEYYMHLGNDFHGQQA<VCEEITIILSKKLCDNIAGYVMHLMKWIQRGPVRGTSIKLQEEERER* |
Parental | DNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRGAV |
DN.VPEVS.LDQEI.EVD.DTKEML.LL...SLSNLQ.TQPT.GMNFKT..G.V | |
Retrocopy | DNCVPEVSTLDQEITEVDSDTKEMLQLLEISSLSNLQLTQPTTGMNFKTTHGVV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 73 .28 RPM |
SRP017611_kidney | 0 .00 RPM | 114 .42 RPM |
SRP017611_liver | 0 .00 RPM | 90 .67 RPM |
SRP040447_lung | 0 .00 RPM | 165 .83 RPM |
SRP040447_skeletal_muscle | 0 .01 RPM | 132 .79 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000012225 | 4 retrocopies | |
Ailuropoda melanoleuca | ENSAMEG00000014122 | 5 retrocopies | |
Bos taurus | ENSBTAG00000000622 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000013053 | 9 retrocopies | |
Cavia porcellus | ENSCPOG00000014693 | 3 retrocopies |
retro_cpor_1472 , retro_cpor_246, retro_cpor_440,
|
Dasypus novemcinctus | ENSDNOG00000012633 | 6 retrocopies | |
Equus caballus | ENSECAG00000024902 | 1 retrocopy | |
Felis catus | ENSFCAG00000002358 | 7 retrocopies | |
Homo sapiens | ENSG00000182774 | 11 retrocopies | |
Homo sapiens | ENSG00000184779 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000031717 | 5 retrocopies | |
Myotis lucifugus | ENSMLUG00000022830 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000011327 | 6 retrocopies | |
Monodelphis domestica | ENSMODG00000002011 | 9 retrocopies | |
Mustela putorius furo | ENSMPUG00000015571 | 5 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006370 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006888 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000019106 | 6 retrocopies |