RetrogeneDB ID: | retro_btau_731 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 18:53049475..53049864(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS17 | ||
Ensembl ID: | ENSBTAG00000000622 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S17 [Source:UniProtKB/Swiss-Prot;Acc:A5PK63] |
Percent Identity: | 65.65 % |
Parental protein coverage: | 95.56 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAII-PSKKLRNKIAGYVTHLMKRIQRGPVRGI |
.G...TKTVKKAA.......YT.LG..FHTNKRV..EIA.I....K..NKI.G.V.HLM.RIQRGPVRG. | |
Retrocopy | VGQDLTKTVKKAAPGHYQEVYTSLGSNFHTNKRVGQEIALI<SGRKFSNKIKGRVAHLMNRIQRGPVRGV |
Parental | SIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVT-QPTVGMNFK |
SI.LQE...E.R.NYVPEVSALD.EI.EVDPD.K..LKLL.FGSLS.LQVT.Q.TVGMN.. | |
Retrocopy | SIQLQEKAGEGRENYVPEVSALD*EIPEVDPDSKKTLKLLEFGSLSKLQVTQQATVGMNLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 8 .65 RPM | 176 .71 RPM |
ERP005899_muscle | 0 .00 RPM | 973 .85 RPM |
SRP017611_brain | 0 .14 RPM | 94 .01 RPM |
SRP017611_kidney | 0 .00 RPM | 326 .59 RPM |
SRP017611_liver | 10 .72 RPM | 182 .88 RPM |
SRP030211_testis | 0 .14 RPM | 179 .78 RPM |