RetrogeneDB ID: | retro_cfam_82 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 32:23173461..23173848(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000010666 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS17 | ||
Ensembl ID: | ENSCAFG00000013053 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris ribosomal protein S17 (RPS17), mRNA. [Source:RefSeq mRNA;Acc:NM_001003099] |
Percent Identity: | 92.97 % |
Parental protein coverage: | 95.52 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | TVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEE |
TVKKAARVIIE.YYTRLGNDFHTNKRVC.EIAIIPSKKLRNKI..YVTHLMK.IQ.GPVRGISIKLQEEE | |
Retrocopy | TVKKAARVIIEEYYTRLGNDFHTNKRVCKEIAIIPSKKLRNKISSYVTHLMKWIQWGPVRGISIKLQEEE |
Parental | RERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRGAV |
RERRDNYVPE.SALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKT..GAV | |
Retrocopy | RERRDNYVPEGSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTSWGAV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .08 RPM | 232 .34 RPM |
SRP017611_brain | 0 .00 RPM | 76 .61 RPM |
SRP017611_kidney | 0 .00 RPM | 629 .86 RPM |
SRP017611_liver | 0 .00 RPM | 150 .39 RPM |