RetrogeneDB ID: | retro_fcat_288 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:200667224..200667577(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS17 | ||
Ensembl ID: | ENSFCAG00000002358 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S17 [Source:UniProtKB/Swiss-Prot;Acc:P63275] |
Percent Identity: | 57.72 % |
Parental protein coverage: | 88.89 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | MGRVRTKTVKKAARVIIEKYYTRLGNDF-HTNKRVCEE-IAIIPSKKLRNKIAGYVTHLMKRIQRGPVRG |
.G...TK..K....V.IE.YY..LGN.F.H.NK....E...IIPSK...NKI....THLMK....G..R. | |
Retrocopy | LGSIHTK-LKNIV*VFIETYYICLGNNF>HVNKHMSKE<VTIIPSKNVHNKIVRCATHLMKGL*SGLMRI |
Parental | ISIKLQEEERERRDNYVPE-VSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVT |
I.I.LQ..ERE.R.NYVPE.VSALDQEII.VD.DTK.ML.LL.FG.LSNL.VT | |
Retrocopy | IPITLQKKERE-RNNYVPE<VSALDQEII*VDSDTK*MLNLLNFGNLSNLKVT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 78 .16 RPM |
SRP017611_kidney | 0 .00 RPM | 347 .30 RPM |
SRP017611_liver | 0 .00 RPM | 177 .82 RPM |