RetrogeneDB ID: | retro_cfam_1032 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 21:22470747..22471147(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS17 | ||
Ensembl ID: | ENSCAFG00000013053 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris ribosomal protein S17 (RPS17), mRNA. [Source:RefSeq mRNA;Acc:NM_001003099] |
Percent Identity: | 81.62 % |
Parental protein coverage: | 99.25 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | RVRTKTVKKAARVIIEKYYTRLGNDFHTNK-RVCEEIAIIPSKKLRNKIAGYVTHLMKRIQR-GPVRGIS |
R..T.T...........Y.TRLGNDFHTNK..VCEEIAIIPS.KL.NKIAGYVTH.MKRIQR.GPVRGIS | |
Retrocopy | RAWTRTPTSGLXXXVLQY*TRLGNDFHTNK<AVCEEIAIIPSRKLCNKIAGYVTHRMKRIQR<GPVRGIS |
Parental | IKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQV-TQPTVGMNFKTPRGAV |
IKLQEEERERRDNYVP.VSALDQEIIEVDPD.KEMLKLLDFGSLSNLQV.TQPTVGMNFK.PRGAV | |
Retrocopy | IKLQEEERERRDNYVPKVSALDQEIIEVDPDAKEMLKLLDFGSLSNLQVITQPTVGMNFKAPRGAV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 232 .34 RPM |
SRP017611_brain | 0 .00 RPM | 76 .61 RPM |
SRP017611_kidney | 0 .20 RPM | 629 .86 RPM |
SRP017611_liver | 0 .00 RPM | 150 .39 RPM |