RetrogeneDB ID: | retro_rnor_19 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 6:108980942..108981350(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000029835 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps17 | ||
Ensembl ID: | ENSRNOG00000019106 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S17 [Source:UniProtKB/Swiss-Prot;Acc:P04644] |
Percent Identity: | 88.15 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKNLRNKIAGYVTHLMKRIQRGPVRGIS |
MGR..TK..KKAA.VIIEKYYT.L.NDFHTNKRVC.EIA.IPSKN..NKIAGYVTHLMKRIQRGPVRGI. | |
Retrocopy | MGRICTKAMKKAAWVIIEKYYTCLDNDFHTNKRVCKEIANIPSKNIWNKIAGYVTHLMKRIQRGPVRGIP |
Parental | IKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRGAV |
IKLQEEERERRDNYVPE.SALDQEI.EVDPDTKEMLKLLDFGSLSNLQVTQPTVG.NFKTP.GAV | |
Retrocopy | IKLQEEERERRDNYVPEGSALDQEITEVDPDTKEMLKLLDFGSLSNLQVTQPTVGRNFKTPHGAV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .07 RPM | 28 .76 RPM |
SRP017611_kidney | 0 .00 RPM | 61 .41 RPM |
SRP017611_liver | 0 .00 RPM | 37 .32 RPM |