RetrogeneDB ID: | retro_hsap_2559 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 22:32435475..32435880(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000232346 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS17 | ||
Ensembl ID: | ENSG00000184779 | ||
Aliases: | RPS17, DBA4, RPS17L, RPS17L1, RPS17L2, S17 | ||
Description: | ribosomal protein S17 [Source:HGNC Symbol;Acc:10397] |
Percent Identity: | 96.3 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGIS |
M.RV.TKTVKKAARVIIEKYYTRLGNDFHTNKRVC.EIAIIPSKKLRNKIAGYVTHLMK.IQRGPVRGIS | |
Retrocopy | MCRVCTKTVKKAARVIIEKYYTRLGNDFHTNKRVCKEIAIIPSKKLRNKIAGYVTHLMKWIQRGPVRGIS |
Parental | IKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRGPV |
IKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFK.PRGPV | |
Retrocopy | IKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKMPRGPV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .20 RPM | 0 .08 RPM |
bodymap2_adrenal | 0 .14 RPM | 0 .14 RPM |
bodymap2_brain | 0 .05 RPM | 0 .00 RPM |
bodymap2_breast | 0 .14 RPM | 0 .08 RPM |
bodymap2_colon | 0 .17 RPM | 0 .14 RPM |
bodymap2_heart | 0 .00 RPM | 0 .06 RPM |
bodymap2_kidney | 0 .12 RPM | 0 .00 RPM |
bodymap2_liver | 0 .00 RPM | 0 .00 RPM |
bodymap2_lung | 0 .04 RPM | 0 .09 RPM |
bodymap2_lymph_node | 0 .18 RPM | 0 .00 RPM |
bodymap2_ovary | 0 .19 RPM | 0 .08 RPM |
bodymap2_prostate | 0 .21 RPM | 0 .07 RPM |
bodymap2_skeletal_muscle | 0 .05 RPM | 0 .00 RPM |
bodymap2_testis | 0 .26 RPM | 0 .08 RPM |
bodymap2_thyroid | 0 .19 RPM | 0 .13 RPM |
bodymap2_white_blood_cells | 0 .18 RPM | 0 .08 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_107977 | 10 libraries | 0 libraries | 2 libraries | 5 libraries | 1812 libraries |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .32 RPM |
CEU_NA11843 | 0 .74 RPM |
CEU_NA11930 | 1 .76 RPM |
CEU_NA12004 | 0 .27 RPM |
CEU_NA12400 | 1 .23 RPM |
CEU_NA12751 | 0 .44 RPM |
CEU_NA12760 | 1 .53 RPM |
CEU_NA12827 | 0 .99 RPM |
CEU_NA12872 | 0 .87 RPM |
CEU_NA12873 | 0 .29 RPM |
FIN_HG00183 | 0 .69 RPM |
FIN_HG00277 | 0 .44 RPM |
FIN_HG00315 | 0 .52 RPM |
FIN_HG00321 | 0 .94 RPM |
FIN_HG00328 | 0 .62 RPM |
FIN_HG00338 | 0 .85 RPM |
FIN_HG00349 | 0 .80 RPM |
FIN_HG00375 | 0 .64 RPM |
FIN_HG00377 | 0 .83 RPM |
FIN_HG00378 | 0 .34 RPM |
GBR_HG00099 | 0 .90 RPM |
GBR_HG00111 | 0 .69 RPM |
GBR_HG00114 | 0 .39 RPM |
GBR_HG00119 | 0 .65 RPM |
GBR_HG00131 | 0 .23 RPM |
GBR_HG00133 | 0 .29 RPM |
GBR_HG00134 | 0 .68 RPM |
GBR_HG00137 | 0 .49 RPM |
GBR_HG00142 | 0 .47 RPM |
GBR_HG00143 | 0 .32 RPM |
TSI_NA20512 | 0 .62 RPM |
TSI_NA20513 | 0 .17 RPM |
TSI_NA20518 | 0 .83 RPM |
TSI_NA20532 | 0 .31 RPM |
TSI_NA20538 | 0 .41 RPM |
TSI_NA20756 | 0 .64 RPM |
TSI_NA20765 | 0 .21 RPM |
TSI_NA20771 | 0 .71 RPM |
TSI_NA20786 | 0 .47 RPM |
TSI_NA20798 | 0 .56 RPM |
YRI_NA18870 | 0 .74 RPM |
YRI_NA18907 | 0 .24 RPM |
YRI_NA18916 | 0 .19 RPM |
YRI_NA19093 | 0 .26 RPM |
YRI_NA19099 | 0 .40 RPM |
YRI_NA19114 | 0 .26 RPM |
YRI_NA19118 | 0 .44 RPM |
YRI_NA19213 | 0 .22 RPM |
YRI_NA19214 | 0 .17 RPM |
YRI_NA19223 | 0 .30 RPM |