RetrogeneDB ID: | retro_acar_177 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | GL343317.1:138342..138591(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSACAG00000012225 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 97.59 % |
Parental protein coverage: | 61.94 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | YVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP |
.VTHLMKRIQRGPVRGISIKLQ.EERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP | |
Retrocopy | HVTHLMKRIQRGPVRGISIKLQKEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP |
Parental | TVGMNFKTPRGAI |
TVGMNFKTPRGAI | |
Retrocopy | TVGMNFKTPRGAI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 5 .88 RPM | 1633 .06 RPM |
SRP009831_brain | 2 .98 RPM | 157 .55 RPM |
SRP009831_dewlap | 4 .56 RPM | 272 .44 RPM |
SRP009831_embryo | 1 .60 RPM | 706 .61 RPM |
SRP009831_heart | 7 .06 RPM | 527 .80 RPM |
SRP009831_liver | 2 .54 RPM | 1138 .06 RPM |
SRP009831_lung | 1 .26 RPM | 577 .58 RPM |
SRP009831_ovary | 3 .98 RPM | 255 .28 RPM |
SRP009831_skeletal_muscle | 0 .29 RPM | 297 .89 RPM |