RetrogeneDB ID: | retro_cpor_305 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_12:29792759..29793099(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000004321 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.55 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANV-SIGSLICNVGAGGPA |
MAS.SEL.CI.S.LIL.D.EVTV..DKINALIK.AGVNV.PFW.GL.AKAL..V..I...IC.VG...PA | |
Retrocopy | MASISELTCIHSDLILQDCEVTVMKDKINALIKVAGVNVQPFWTGLCAKALVSV<QIDVFICSVGTSDPA |
Parental | PAAGAAPAGSPAPTTTAAP-AEEKKVEAKKEESEESDDDMGFGLFD |
P.AGAAP.G.P...TTAA...EEKKVEAK.EESEESDDDMGFGLFD | |
Retrocopy | PSAGAAPRGGPPLPTTAAS<GEEKKVEAKREESEESDDDMGFGLFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 136 .14 RPM |
SRP017611_kidney | 0 .00 RPM | 264 .86 RPM |
SRP017611_liver | 0 .00 RPM | 118 .09 RPM |
SRP040447_lung | 0 .00 RPM | 344 .84 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 858 .33 RPM |