RetrogeneDB ID: | retro_dnov_561 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_6207:5988..6318(-) | ||
Located in intron of: | ENSDNOG00000013690 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000014224 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.26 % |
Parental protein coverage: | 99.12 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANISIGSLICNVGAGGPAP |
MASVSELACIY..L.L.....T....KINALIKA.GVNVE.FWPGLFAKA.AN...GSL.CNVG...PAP | |
Retrocopy | MASVSELACIYQVLLLNEVTMTGDGMKINALIKAVGVNVESFWPGLFAKARANVNTGSLVCNVG---PAP |
Parental | AAGAAPAGGPAPTTTAAPAEEKKVEAKKEESEESDDDMGFGLF |
A.G.AP..GP.PTTT.A...EKKVEAKKEE.E..DDDMG...F | |
Retrocopy | APGTAPVEGPVPTTTDALPKEKKVEAKKEEPEVLDDDMGLWSF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .19 RPM | 855 .66 RPM |
SRP012922_cerebellum | 0 .00 RPM | 408 .28 RPM |
SRP012922_heart | 0 .46 RPM | 468 .47 RPM |
SRP012922_kidney | 0 .27 RPM | 1049 .46 RPM |
SRP012922_liver | 0 .15 RPM | 483 .62 RPM |
SRP012922_lung | 0 .15 RPM | 1291 .44 RPM |
SRP012922_quadricep_muscle | 0 .35 RPM | 1577 .15 RPM |
SRP012922_spleen | 0 .23 RPM | 1258 .96 RPM |