RetrogeneDB ID: | retro_dnov_240 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_2908:18317..18642(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000014224 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.75 % |
Parental protein coverage: | 96.49 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | ASVSELACIYSALILHDDEVTVTEDK-INA-LIKAAGVNVEPFWPGLFAKALANISIGSLICNVGAGGPA |
A.V.EL.CI..ALILHDDE.T..EDK..NA.L.KAAG...EPF.PGLFAKA..N..I.SLICNVGA.G.A | |
Retrocopy | AFVPELSCIQAALILHDDEITTKEDK<VNA<LLKAAGGHSEPFCPGLFAKAPINVNIRSLICNVGAVGLA |
Parental | PAAGAAPAGGPAPTTTAAPAEEKKVEAKKEESEESDDDMGFG |
P..GAAP.GGP....TAAP..E.KVE.KKEESEESDDD.GFG | |
Retrocopy | PPVGAAPVGGPLSSITAAPVAE-KVEEKKEESEESDDDVGFG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 855 .66 RPM |
SRP012922_cerebellum | 0 .00 RPM | 408 .28 RPM |
SRP012922_heart | 0 .23 RPM | 468 .47 RPM |
SRP012922_kidney | 0 .00 RPM | 1049 .46 RPM |
SRP012922_liver | 0 .00 RPM | 483 .62 RPM |
SRP012922_lung | 0 .00 RPM | 1291 .44 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 1577 .15 RPM |
SRP012922_spleen | 0 .00 RPM | 1258 .96 RPM |