RetrogeneDB ID: | retro_dnov_601 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_669:235661..235930(+) | ||
Located in intron of: | ENSDNOG00000010450 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000014224 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.52 % |
Parental protein coverage: | 78.95 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | EDKINALIKAAGVNVEPFWPGLFAKALANISIGSLICN-VGAGGPAPAAGAAPAGGPAPTTTAAPAEEKK |
EDKIN.LI.AAGVNVEPFWPGLF.KALANIS.GSLICN..GAGG.APAAG.APAG.PAPTTTAAPAEEKK | |
Retrocopy | EDKINVLIEAAGVNVEPFWPGLFEKALANISTGSLICN>AGAGGSAPAAGVAPAGNPAPTTTAAPAEEKK |
Parental | VEAKKEE-SEESDDDMGFGLFD |
VEAKKEE..E..D..MGFG..D | |
Retrocopy | VEAKKEE>EESDD-NMGFGVSD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .19 RPM | 855 .66 RPM |
SRP012922_cerebellum | 0 .00 RPM | 408 .28 RPM |
SRP012922_heart | 0 .00 RPM | 468 .47 RPM |
SRP012922_kidney | 0 .00 RPM | 1049 .46 RPM |
SRP012922_liver | 0 .00 RPM | 483 .62 RPM |
SRP012922_lung | 0 .00 RPM | 1291 .44 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 1577 .15 RPM |
SRP012922_spleen | 0 .11 RPM | 1258 .96 RPM |