Parental gene:

ENSSSCG00000004970

Aliases:None
Description:60S acidic ribosomal protein P1 [Source:RefSeq peptide;Acc:NP_001123436]
Organism:Pig (Sus scrofa)
Coordinates:1:185385026..185387204(-)


>ENSSSCG00000004970
ATGGCTTCCGTCTCGGAGCTCGCCTGCATCTACTCTGCCCTCATTCTGCACGACGATGAGGTTACGGTCACGGAGGATAA
GATCAATGCTCTCATTAAAGCAGCAGGTGTAAATGTTGAGCCATTCTGGCCAGGCTTGTTTGCAAAGGCTCTGGCCAATG
TCAACATCGGGAGCCTCATCTGCAATGTGGGGGCTGGTGGACCTGCCCCAGCAGCTGGTGCTGCACCAGCAGGAGGTCCT
GCCCCAGCCACCACTGCTGCCCCAGCTGAGGAGAAGAAAGTAGAAGCAAAGAAAGAAGAATCTGAGGAGTCTGATGATGA
TATGGGCTTTGGTCTTTTTGACTAA

Library Parental gene expression (RPM)
SRP014902_placenta 1617 .86 RPM
SRP014902_testis 725 .90 RPM
SRP018856_adipose 1028 .28 RPM
SRP018288_kidney 656 .64 RPM
SRP018288_lung 934 .87 RPM
SRP018288_liver 457 .02 RPM
SRP018288_heart 643 .73 RPM
SRP035408_liver 904 .63 RPM
SRP035408_brain 921 .91 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014251 ortholog_one2one 20 retrogenes
retro_amel_1030, retro_amel_1076, retro_amel_110, retro_amel_1152, retro_amel_1191, retro_amel_128, retro_amel_1343, retro_amel_1345, retro_amel_1354, retro_amel_1428, retro_amel_161, retro_amel_1694, retro_amel_1696, retro_amel_1705, retro_amel_1852, retro_amel_205, retro_amel_316, retro_amel_395, retro_amel_404, retro_amel_769,
Cavia porcellus ENSCPOG00000004321 ortholog_one2one 6 retrogenes
retro_cpor_1011, retro_cpor_1058, retro_cpor_260, retro_cpor_305, retro_cpor_667, retro_cpor_75,
Dasypus novemcinctus ENSDNOG00000014224 ortholog_one2one 26 retrogenes
retro_dnov_1130, retro_dnov_1325, retro_dnov_1410, retro_dnov_1439, retro_dnov_146, retro_dnov_1467, retro_dnov_1580, retro_dnov_1660, retro_dnov_1667, retro_dnov_17, retro_dnov_1748, retro_dnov_179, retro_dnov_1878, retro_dnov_1911, retro_dnov_1967, retro_dnov_20, retro_dnov_2075, retro_dnov_2234, retro_dnov_240, retro_dnov_2421, retro_dnov_2618, retro_dnov_2640, retro_dnov_405, retro_dnov_561, retro_dnov_601, retro_dnov_746,
Latimeria chalumnae ENSLACG00000012630 ortholog_many2many 1 retrogene
retro_lcha_7,
Macropus eugenii ENSMEUG00000015277 possible_ortholog 6 retrogenes
retro_meug_1096, retro_meug_1283, retro_meug_1312, retro_meug_1401, retro_meug_1515, retro_meug_793,
Macropus eugenii ENSMEUG00000015282 ortholog_many2many 2 retrogenes
retro_meug_207, retro_meug_45,
Monodelphis domestica ENSMODG00000009209 possible_ortholog 1 retrogene
retro_mdom_1022,
Monodelphis domestica ENSMODG00000009218 ortholog_many2many 4 retrogenes
retro_mdom_1168, retro_mdom_2001, retro_mdom_385, retro_mdom_50,
Oryctolagus cuniculus ENSOCUG00000015087 possible_ortholog 8 retrogenes
retro_ocun_1009, retro_ocun_1464, retro_ocun_1655, retro_ocun_1735, retro_ocun_48, retro_ocun_551, retro_ocun_647, retro_ocun_884,
Ochotona princeps ENSOPRG00000001163 possible_ortholog 11 retrogenes
retro_opri_1010, retro_opri_130, retro_opri_214, retro_opri_245, retro_opri_38, retro_opri_530, retro_opri_645, retro_opri_768, retro_opri_784, retro_opri_96, retro_opri_972,
Sarcophilus harrisii ENSSHAG00000014818 possible_ortholog 6 retrogenes
retro_shar_182, retro_shar_234, retro_shar_449, retro_shar_550, retro_shar_614, retro_shar_742,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_4 71.05 66.67
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2. retro_sscr_16 92.04 99.12
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3. retro_sscr_18 79.82 100.00
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4. retro_sscr_47 82.22 78.95
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5. retro_sscr_176 72.57 98.25
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6. retro_sscr_259 91.74 95.61
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7. retro_sscr_307 81.42 98.25
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8. retro_sscr_323 75.65 100.00
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9. retro_sscr_583 81.74 100.00
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10. retro_sscr_776 71.05 98.25
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11. retro_sscr_904 74.16 77.19
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12. retro_sscr_923 81.98 94.74
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13. retro_sscr_1105 84.55 96.49
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14. retro_sscr_1165 62.65 71.93
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15. retro_sscr_1184 80.37 91.23
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16. retro_sscr_1185 86.11 62.28
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Download FASTA sequences of all ENSSSCG00000004970 retrocopies