RetrogeneDB ID: | retro_cpor_1011 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_4:24698875..24699210(+) | ||
Located in intron of: | ENSCPOG00000011592 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000004321 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.05 % |
Parental protein coverage: | 99.12 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | ASVSELACIYSALILHDDEVT-VTEDKINALIKAAGVNVEPFWPGLFAKALANVSIGSLICNVGAGGPAP |
AS.SEL..IY.ALIL.D...T...EDKINALIK.AGV....FWPGL..KALA.V.IGSLIC.V.AGGP.P | |
Retrocopy | ASISELSYIYLALILRDNK*T<IVEDKINALIKVAGVSADSFWPGLLRKALAKVNIGSLICSVVAGGPEP |
Parental | AAGAAPAGSPAPTTTAAPAEEKKVEAKKEESEESDDDMGFGLFD |
.AGAAPAG.P.P.TTAAPAEEK.V.AKK.ESEE.DD.MGF.LFD | |
Retrocopy | TAGAAPAGGPSPSTTAAPAEEKEVKAKK-ESEEPDDNMGFRLFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 136 .14 RPM |
SRP017611_kidney | 0 .00 RPM | 264 .86 RPM |
SRP017611_liver | 0 .00 RPM | 118 .09 RPM |
SRP040447_lung | 0 .10 RPM | 344 .84 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 858 .33 RPM |