RetrogeneDB ID: | retro_sscr_923 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 7:129732172..129732495(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000002534 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSSCG00000004970 | ||
Aliases: | None | ||
Description: | 60S acidic ribosomal protein P1 [Source:RefSeq peptide;Acc:NP_001123436] |
Percent Identity: | 81.98 % |
Parental protein coverage: | 94.74 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | LACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFW-PGLFAK-ALANVNIGSLICNVGAGGPAP-AAG |
LAC..SAL.L.DDEVTVTED.I.AL.KAAGVN.EPF..PGL.AK.ALA.VN.GSLIC.VGAGGPAP.AAG | |
Retrocopy | LACVSSALSLQDDEVTVTEDEIEALMKAAGVNAEPFC<PGLSAK<ALASVNMGSLICSVGAGGPAP>AAG |
Parental | AAPAGGPAPATTAAPAEEKKVEAKKEESEESDDDMGFGLFD |
..PAG.PAPATTAAPAEEKKVEAKKEESEESDDD.GFGLFD | |
Retrocopy | TPPAGNPAPATTAAPAEEKKVEAKKEESEESDDDTGFGLFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 3 .72 RPM | 1617 .86 RPM |
SRP014902_testis | 1 .84 RPM | 725 .90 RPM |
SRP018288_heart | 0 .34 RPM | 643 .73 RPM |
SRP018288_kidney | 0 .30 RPM | 656 .64 RPM |
SRP018288_liver | 0 .00 RPM | 457 .02 RPM |
SRP018288_lung | 1 .22 RPM | 934 .87 RPM |
SRP018856_adipose | 0 .46 RPM | 1028 .28 RPM |
SRP035408_brain | 0 .92 RPM | 921 .91 RPM |
SRP035408_liver | 0 .12 RPM | 904 .63 RPM |