RetrogeneDB ID: | retro_dnov_2142 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_5089:85751..86217(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAN | ||
Ensembl ID: | ENSDNOG00000009230 | ||
Aliases: | None | ||
Description: | RAN, member RAS oncogene family [Source:HGNC Symbol;Acc:9846] |
Percent Identity: | 79.11 % |
Parental protein coverage: | 75.98 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKDRK |
..WDTAGQEKFGGLRDGYY.QA.CAI.MFDV.SRVTYKNVPN.W.RDLV.VCENI...L..NKVDIKDRK | |
Retrocopy | SMWDTAGQEKFGGLRDGYYSQALCAILMFDVPSRVTYKNVPN<WQRDLV*VCENISTMLSDNKVDIKDRK |
Parental | VKAKSIVFHRKKNLQYYDISAKSNYNFEKP-FLWLARKLIGDPNLEFVAMPALAPPEV-VMDPALAAQYE |
VKAKSI.FH.KKN.QYYDIS.KSN.NFEKP.FL.L.RKLI.DPNL.FVAM.ALAPPEV..MDP.LAAQ.E | |
Retrocopy | VKAKSIIFHQKKNFQYYDISDKSNDNFEKPFFLQLVRKLIRDPNL*FVAMSALAPPEV<FMDPLLAAQFE |
Parental | HDLEVAQTTALPDEDDDL |
H.LEV.QTTA..DEDDDL | |
Retrocopy | HNLEVSQTTAMLDEDDDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 90 .43 RPM |
SRP012922_cerebellum | 0 .00 RPM | 48 .66 RPM |
SRP012922_heart | 0 .00 RPM | 28 .31 RPM |
SRP012922_kidney | 0 .00 RPM | 54 .49 RPM |
SRP012922_liver | 0 .00 RPM | 37 .77 RPM |
SRP012922_lung | 0 .00 RPM | 43 .68 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 52 .10 RPM |
SRP012922_spleen | 0 .00 RPM | 88 .14 RPM |