RetrogeneDB ID: | retro_fcat_1230 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:171547897..171548386(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAN | ||
Ensembl ID: | ENSFCAG00000027375 | ||
Aliases: | None | ||
Description: | RAN, member RAS oncogene family [Source:HGNC Symbol;Acc:9846] |
Percent Identity: | 71.69 % |
Parental protein coverage: | 80.98 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | QLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYI |
.LVLVGD..TGKTTF.K.HLT.E.EK.YVA.LGVE.H.LVFH...GPI.FNVWDTAGQEKFG.LRDGY.. | |
Retrocopy | KLVLVGDASTGKTTFMKYHLTDELEK-YVANLGVEAHLLVFHSK*GPIEFNVWDTAGQEKFGELRDGYDT |
Parental | QAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISA |
.AQCAII..DVT.RVTYKNV.N..R.....C...P.VLC..KV...D.KVKAKSI.F..KKNLQ.YDISA | |
Retrocopy | *AQCAIIIYDVTARVTYKNVHN*QRSGTSMCK-YPTVLC-DKVNSQDSKVKAKSIAFRQKKNLQFYDISA |
Parental | KSNYNFEKPFLWLARKLIGDPNLEFV |
KSNYNFEKPFL.LARKL.GDPNLE.V | |
Retrocopy | KSNYNFEKPFLCLARKLFGDPNLEVV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 58 .42 RPM |
SRP017611_kidney | 0 .00 RPM | 66 .16 RPM |
SRP017611_liver | 0 .00 RPM | 39 .43 RPM |