RetrogeneDB ID: | retro_rnor_138 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 5:59030884..59031535(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000031013 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ran | ||
Ensembl ID: | ENSRNOG00000000938 | ||
Aliases: | None | ||
Description: | GTP-binding nuclear protein Ran [Source:UniProtKB/Swiss-Prot;Acc:P62828] |
Percent Identity: | 93.52 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE |
MAA.GEP.VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPL.FHT.RGPIKFNVWDTAGQE | |
Retrocopy | MAAEGEPPVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLMFHTSRGPIKFNVWDTAGQE |
Parental | KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHR |
KFGGLRDGYYIQAQ.AIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVD.KDRKVKAKSIVFHR | |
Retrocopy | KFGGLRDGYYIQAQGAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSIVFHR |
Parental | KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALP |
KKNLQYYDISAKSNYNFEKPFLWL.R.L.GD.NLEFVAMPALAPPEV.MDPALA..YE.DLEVAQTTALP | |
Retrocopy | KKNLQYYDISAKSNYNFEKPFLWLSRRLTGDSNLEFVAMPALAPPEVIMDPALAKKYERDLEVAQTTALP |
Parental | DEDDDL |
DEDDDL | |
Retrocopy | DEDDDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 106 .98 RPM |
SRP017611_kidney | 0 .00 RPM | 85 .20 RPM |
SRP017611_liver | 0 .00 RPM | 46 .19 RPM |
Species | RetrogeneDB ID |
---|---|
Mus musculus | retro_mmus_265 |