RetrogeneDB ID: | retro_mdom_969 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 3:56599727..56600084(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMODG00000015601 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.3 % |
Parental protein coverage: | 56.02 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | HPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPI |
..LVFHTNRGP.KF.V.D.AGQEKFGGLRD.Y.IQ.QCAIIMF.VTSRVTYKNVPNWHRDLV.VCENI.I | |
Retrocopy | YTLVFHTNRGPVKFKV*DIAGQEKFGGLRDDY*IQDQCAIIMFGVTSRVTYKNVPNWHRDLVGVCENISI |
Parental | VLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL |
VLCGN..DIKDRKVKAK...FHRKKNLQY.DISAKSNYNFEKP.LWLARKL | |
Retrocopy | VLCGNRLDIKDRKVKAK--IFHRKKNLQY*DISAKSNYNFEKPCLWLARKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |