RetrogeneDB ID: | retro_opri_97 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | GeneScaffold_2210:193677..194202(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAN | ||
Ensembl ID: | ENSOPRG00000002629 | ||
Aliases: | None | ||
Description: | RAN, member RAS oncogene family [Source:HGNC Symbol;Acc:9846] |
Percent Identity: | 76.27 % |
Parental protein coverage: | 99.43 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | LGVEVPPLVS-TNRGSIKFNRLDTARQEKFGGLRGGSYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC |
.GVEV..L...T..GSIKF...DTA.QEK..GL..G.YIQ.QCAIIM.DVTSRVTYKNVPNWHRDLV.V. | |
Retrocopy | VGVEVQLLIFYTTQGSIKFSVSDTAGQEKLVGLWNGYYIQVQCAIIMLDVTSRVTYKNVPNWHRDLVCVY |
Parental | ENIPIVLCGNKVD-IKDRKVKAKSIVFHR-KKNLQYYDISAKSNYNFEKPFLWLARKLIGD-PNLEFVAM |
ENIPIVLCGNKVD.IK.RK.K.KSIVFH..KKNLQYYDISAKSNYNFEKPFLWLAR.L.GD.P.LEFVAM | |
Retrocopy | ENIPIVLCGNKVDLIKVRKMKVKSIVFHQ<KKNLQYYDISAKSNYNFEKPFLWLARRLVGD>PDLEFVAM |
Parental | PALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDDL |
PALAP.EVVMD.ALA...EH.LEVAQT..LP.E.D.L | |
Retrocopy | PALAPLEVVMDLALAVL*EHNLEVAQTRGLPHEHDHL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |