RetrogeneDB ID: | retro_dnov_2317 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_63406:3566..3850(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FXN | ||
Ensembl ID: | ENSDNOG00000024066 | ||
Aliases: | None | ||
Description: | frataxin [Source:HGNC Symbol;Acc:3951] |
Percent Identity: | 65.31 % |
Parental protein coverage: | 61.69 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | SLDETTYERL-AEETLDSLAEF-FEDLADKSCTFEDYDVSFGSGVLTIKLGGNLGTYVINKQTPNRQIWL |
SLDETTYERL..EE.LDS.AEF.FE.LADKS.T.EDYDV...SGVL.IKL.G.L.T...NKQTP..QIWL | |
Retrocopy | SLDETTYERL>SEEALDSVAEF<FENLADKSYTYEDYDVLSMSGVLSIKLDGDLETNMVNKQTPIKQIWL |
Parental | SSPSXXXXXYDWTG-KNWVYSHDGVSLH |
SS.S......DWTG.K..VYS..G..LH | |
Retrocopy | SSLS*GSEC*DWTG<KKTVYSQNGAPLH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 2 .14 RPM |
SRP012922_cerebellum | 0 .00 RPM | 4 .81 RPM |
SRP012922_heart | 0 .46 RPM | 4 .64 RPM |
SRP012922_kidney | 0 .00 RPM | 4 .65 RPM |
SRP012922_liver | 0 .00 RPM | 1 .55 RPM |
SRP012922_lung | 0 .00 RPM | 5 .04 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 3 .46 RPM |
SRP012922_spleen | 0 .00 RPM | 6 .75 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006915 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000005107 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000001695 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000024066 | 3 retrocopies |
retro_dnov_2204, retro_dnov_2317 , retro_dnov_307,
|
Equus caballus | ENSECAG00000019174 | 1 retrocopy | |
Homo sapiens | ENSG00000165060 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000007636 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000000357 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000009619 | 2 retrocopies | |
Mus musculus | ENSMUSG00000059363 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000031105 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000015213 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000010336 | 4 retrocopies |