RetrogeneDB ID: | retro_rnor_2276 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 6:27606216..27606689(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FXN | ||
Ensembl ID: | ENSRNOG00000015213 | ||
Aliases: | None | ||
Description: | Frataxin, mitochondrial Frataxin intermediate form Frataxin mature form [Source:UniProtKB/Swiss-Prot;Acc:D3ZYW7] |
Percent Identity: | 54.72 % |
Parental protein coverage: | 75.96 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | AIRHSHLNLHYLGQILNIKKQSVCVVHLRNSGTLGNPSSLDETAYERLAEETLDALAEFFEDLADKPYTL |
.I...H.NL.YL.QI.N.KKQ.VC.VHLRN.G.L...S.L.E....RL.EE.L.AL.EFFEDL..K.YTL | |
Retrocopy | SIHKVHVNLYYLSQIVNNKKQRVCMVHLRN*GMLNIRSVLEEITHQRLPEEMLNALMEFFEDLTEKSYTL |
Parental | KDYDVSFGVP-LCTVKYSGGRGRRIRNHRCLLLYLWFSGPCSGPKRYDWTGKNWVYSHDGVSLHELLARE |
..Y.VSF.VP.....K.SG.......N........W...P.S.PK..DWT.KNWVYSHD.VSLH.LLA.. | |
Retrocopy | EGYGVSFSVP<MFIIKLSGDIQN*VINKQSPKKQIWLFYPSSSPKWFDWTRKNWVYSHDSVSLHGLLAWD |
Parental | LTEALNTKLDLSSLAYSGK |
LT..L.TKL.LSSLA..GK | |
Retrocopy | LTQTLSTKLNLSSLACFGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 6 .04 RPM |
SRP017611_kidney | 0 .00 RPM | 5 .16 RPM |
SRP017611_liver | 0 .00 RPM | 4 .44 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006915 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000005107 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000001695 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000024066 | 3 retrocopies | |
Equus caballus | ENSECAG00000019174 | 1 retrocopy | |
Homo sapiens | ENSG00000165060 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000007636 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000000357 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000009619 | 2 retrocopies | |
Mus musculus | ENSMUSG00000059363 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000031105 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000015213 | 1 retrocopy |
retro_rnor_2276 ,
|
Tursiops truncatus | ENSTTRG00000010336 | 4 retrocopies |