RetrogeneDB ID: | retro_mmul_826 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 11:90026879..90027359(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FXN | ||
Ensembl ID: | ENSMMUG00000000357 | ||
Aliases: | None | ||
Description: | frataxin, mitochondrial [Source:RefSeq peptide;Acc:NP_001247670] |
Percent Identity: | 85. % |
Parental protein coverage: | 76.19 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MWTFGRRAVAGLLASPSPAQAQTLTRAPRLAELAQLCSRRGLRTGINATCTTHHTSSNLRGLNQIRNVKR |
M.T..R.AVAGLL.SPSPAQAQTLTRAPR.AELA.L....GL.....ATCT.HH.SSNL.GLNQI.NVK. | |
Retrocopy | M*TLRRHAVAGLLSSPSPAQAQTLTRAPRPAELAPL*GLQGLPPDMDATCTPHHASSNLHGLNQIWNVKK |
Parental | QSVYLMNLRKSGTLGHPGSLDDTTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDL |
QS.YLMNLRKSGTLGH.GSLDDTTYERLAEETLDSL.EFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDL | |
Retrocopy | QSAYLMNLRKSGTLGHSGSLDDTTYERLAEETLDSLEEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDL |
Parental | GTYVINKQTPNKQIWLSSPS |
GTYVINKQTPNKQIWLSSPS | |
Retrocopy | GTYVINKQTPNKQIWLSSPS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 4 .48 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 2 .62 RPM |
SRP007412_cerebellum | 0 .00 RPM | 4 .00 RPM |
SRP007412_heart | 0 .12 RPM | 9 .83 RPM |
SRP007412_kidney | 0 .00 RPM | 7 .28 RPM |
SRP007412_liver | 0 .00 RPM | 4 .79 RPM |
SRP007412_testis | 0 .00 RPM | 3 .58 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006915 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000005107 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000001695 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000024066 | 3 retrocopies | |
Equus caballus | ENSECAG00000019174 | 1 retrocopy | |
Homo sapiens | ENSG00000165060 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000007636 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000000357 | 2 retrocopies |
retro_mmul_2038, retro_mmul_826 ,
|
Mustela putorius furo | ENSMPUG00000009619 | 2 retrocopies | |
Mus musculus | ENSMUSG00000059363 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000031105 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000015213 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000010336 | 4 retrocopies |