Parental gene:

FXN, ENSG00000165060

Aliases:FXN, CyaY, FA, FARR, FRDA, X25
Description:frataxin [Source:HGNC Symbol;Acc:3951]
Organism:Human (Homo sapiens)
Coordinates:9:71650174..71715094(+)


>ENSG00000165060
ATGTGGACTCTCGGGCGCCGCGCAGTAGCCGGCCTCCTGGCGTCACCCAGCCCAGCCCAGGCCCAGACCCTCACCCGGGT
CCCGCGGCCGGCAGAGTTGGCCCCACTCTGCGGCCGCCGTGGCCTGCGCACCGACATCGATGCGACCTGCACGCCCCGCC
GCGCAAGTTCGAACCAACGTGGCCTCAACCAGATTTGGAATGTCAAAAAGCAGAGTGTCTATTTGATGAATTTGAGGAAA
TCTGGAACTTTGGGCCACCCAGGCTCTCTAGATGAGACCACCTATGAAAGACTAGCAGAGGAAACGCTGGACTCTTTAGC
AGAGTTTTTTGAAGACCTTGCAGACAAGCCATACACGTTTGAGGACTATGATGTCTCCTTTGGGAGTGGTGTCTTAACTG
TCAAACTGGGTGGAGATCTAGGAACCTATGTGATCAACAAGCAGACGCCAAACAAGCAAATCTGGCTATCTTCTCCATCC
AGTGGACCTAAGCGTTATGACTGGACTGGGAAAAACTGGGTGTACTCCCACGACGGCGTGTCCCTCCATGAGCTGCTGGC
CGCAGAGCTCACTAAAGCCTTAAAAACCAAACTGGACTTGTCTTCCTTGGCCTATTCCGGAAAAGATGCTTGA

Library Parental gene expression (RPM)
bodymap2_liver 23 .85 RPM
bodymap2_lung 3 .67 RPM
bodymap2_breast 8 .33 RPM
bodymap2_adipose 4 .33 RPM
bodymap2_adrenal 11 .16 RPM
bodymap2_skeletal_muscle 7 .82 RPM
bodymap2_thyroid 6 .95 RPM
bodymap2_prostate 15 .54 RPM
bodymap2_colon 6 .03 RPM
bodymap2_testis 10 .90 RPM
bodymap2_brain 5 .53 RPM
bodymap2_heart 19 .29 RPM
bodymap2_white_blood_cells 12 .72 RPM
bodymap2_lymph_node 9 .12 RPM
bodymap2_ovary 15 .63 RPM
bodymap2_kidney 7 .26 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006915 ortholog_one2one 1 retrogene
retro_amel_1496,
Choloepus hoffmanni ENSCHOG00000005107 ortholog_one2one 2 retrogenes
retro_chof_349, retro_chof_94,
Callithrix jacchus ENSCJAG00000001695 ortholog_one2one 4 retrogenes
retro_cjac_1562, retro_cjac_1927, retro_cjac_3939, retro_cjac_813,
Dasypus novemcinctus ENSDNOG00000024066 ortholog_one2one 3 retrogenes
retro_dnov_2204, retro_dnov_2317, retro_dnov_307,
Equus caballus ENSECAG00000019174 ortholog_one2one 1 retrogene
retro_ecab_311,
Gorilla gorilla ENSGGOG00000007636 ortholog_one2one 3 retrogenes
retro_ggor_1112, retro_ggor_2203, retro_ggor_2881,
Macaca mulatta ENSMMUG00000000357 ortholog_one2many 2 retrogenes
retro_mmul_2038, retro_mmul_826,
Mustela putorius furo ENSMPUG00000009619 ortholog_one2one 2 retrogenes
retro_mputfur_501, retro_mputfur_803,
Mus musculus ENSMUSG00000059363 ortholog_one2one 2 retrogenes
retro_mmus_1571, retro_mmus_3058,
Otolemur garnettii ENSOGAG00000031105 ortholog_one2many 2 retrogenes
retro_ogar_1865, retro_ogar_476,
Rattus norvegicus ENSRNOG00000015213 ortholog_one2one 1 retrogene
retro_rnor_2276,
Tursiops truncatus ENSTTRG00000010336 ortholog_one2one 4 retrogenes
retro_ttru_1281, retro_ttru_175, retro_ttru_546, retro_ttru_831,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_1447 85.71 82.96
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2. retro_hsap_4311 85.03 89.05
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Download FASTA sequences of all ENSG00000165060 retrocopies