RetrogeneDB ID:

retro_ogar_476

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873522.1:7394787..7395109(+)
Located in intron of:ENSOGAG00000002807
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000031105
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_476
TTGATGAATTAGAGGAAGTCAGGAACTTTGGGCGAGCCAGCTTCTCTAGATGGGACCACCTAGGAGAGACCAGCAGGGGA
AATGCTGGACCCTCAGCAGAGTTTTTGAAGACCTTGCAGACAAGCCTTACACATTTGAGGACTATGATGATGGCTCCTTT
GGGACAGGTGTCTTAACAATTAAACCGGGTGGAGGTCTAGGAGCCTAGGTGATCGAGAAGCAGCCTCCAAACAAGCAGGT
CTGGTTACCGTCTCCATCCACCGGGCCCAAGTGCCACACATGGACTGGGAAAAACGGAGTGTACTCTCACAATGCTGTGT
CC

ORF - retro_ogar_476 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 73.64 %
Parental protein coverage: 50.71 %
Number of stop codons detected: 3
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalLMNLRKSGTLGEPGSLDDTTYERLAEETLD-SLAEF-FEDLADKPYTFEDY-DVSFGSGVLTIKLGGDLG
LMN.RKSGTLGEP.SLD.TT.ER.A.E.LD...AEF.FEDLADKPYTFEDY.D.SFG.GVLTIK.GG.LG
RetrocopyLMN*RKSGTLGEPASLDGTT*ERPAGEMLD<PSAEF<FEDLADKPYTFEDYDDGSFGTGVLTIKPGGGLG
ParentalTYVINKQTPNKQIWLSSPSSGPKRYDWTGKNWVYSHDGVS
..VI.KQ.PNKQ.WL.SPS.GPK...WTGKN.VYSH..VS
RetrocopyA*VIEKQPPNKQVWLPSPSTGPKCHTWTGKNGVYSHNAVS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_476 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 13 parental genes, and 29 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000069151 retrocopy
Choloepus hoffmanni ENSCHOG000000051072 retrocopies
Callithrix jacchus ENSCJAG000000016954 retrocopies
Dasypus novemcinctus ENSDNOG000000240663 retrocopies
Equus caballus ENSECAG000000191741 retrocopy
Homo sapiens ENSG000001650602 retrocopies
Gorilla gorilla ENSGGOG000000076363 retrocopies
Macaca mulatta ENSMMUG000000003572 retrocopies
Mustela putorius furoENSMPUG000000096192 retrocopies
Mus musculus ENSMUSG000000593632 retrocopies
Otolemur garnettii ENSOGAG00000031105 2 retrocopies
retro_ogar_1865, retro_ogar_476 ,
Rattus norvegicus ENSRNOG000000152131 retrocopy
Tursiops truncatus ENSTTRG000000103364 retrocopies



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