RetrogeneDB ID: | retro_mputfur_501 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL896916.1:11637236..11637694(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FXN | ||
Ensembl ID: | ENSMPUG00000009619 | ||
Aliases: | None | ||
Description: | frataxin [Source:HGNC Symbol;Acc:3951] |
Percent Identity: | 61.64 % |
Parental protein coverage: | 98.71 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | LSLHRLDQMVNVKKQ-SVCWVTVRAVGTVGDPG-SLDETTYERLAEKTLDSLAEFFEDLADKPYTFEDYD |
LSLH.L...VNVKKQ..VC..TV...GT.GDP..SLDETT..RLAEKTLDSL.EF.EDL..K.Y...D.. | |
Retrocopy | LSLHGLHYIVNVKKQ<GVCLMTVWTAGTSGDPA<SLDETTHKRLAEKTLDSLGEFVEDLVEKRYIIKDCE |
Parental | VSFGSGVLTVKLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYDWTG--RNW-VYAHDGVSLHEL-LAAEL |
V..GS.VLTVKLGGD.GTY.INKQTPNKQIWL.S...G......TG..R.W.VY.H..VSL..L..A..L | |
Retrocopy | VLSGS-VLTVKLGGDPGTYGINKQTPNKQIWLCSLWRGGGATLRTGWGRTW<VYSHHDVSLQHL<VATGL |
Parental | TEAFRTQLDLSSLAYSGKG |
T.A..T..D.SSLA.SGKG | |
Retrocopy | TKALKTKWD*SSLASSGKG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006915 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000005107 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000001695 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000024066 | 3 retrocopies | |
Equus caballus | ENSECAG00000019174 | 1 retrocopy | |
Homo sapiens | ENSG00000165060 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000007636 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000000357 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000009619 | 2 retrocopies |
retro_mputfur_501 , retro_mputfur_803,
|
Mus musculus | ENSMUSG00000059363 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000031105 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000015213 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000010336 | 4 retrocopies |