RetrogeneDB ID: | retro_dnov_326 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_3646:427220..427791(-) | ||
Located in intron of: | ENSDNOG00000016209 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RHOA | ||
Ensembl ID: | ENSDNOG00000012825 | ||
Aliases: | None | ||
Description: | ras homolog family member A [Source:HGNC Symbol;Acc:667] |
Percent Identity: | 69.04 % |
Parental protein coverage: | 99.48 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRP |
A.I.KKLVIV.DGACGKTCL.IV.SKD..PEVYVP.VFEN.VAD..VDGK.VELALWD.AGQED...LR. | |
Retrocopy | AVI*KKLVIVSDGACGKTCLFIVVSKDLLPEVYVPVVFENIVADMKVDGK*VELALWDMAGQEDDFHLRS |
Parental | LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK-KDLRNDEHTRRELAKMKQEPVK |
L...DTDV.LMCFSIDSPDSL.NIPEKWT.E.KH.CP.VPIILVGN..KDL.N..HT..ELAK.KQ.PV. | |
Retrocopy | LLCQDTDVTLMCFSIDSPDSLKNIPEKWTLEAKHLCPKVPIILVGNR<KDLQNNVHTWWELAKEKQRPVN |
Parental | PEE-GRDMANRIGAFGYMECSA-KTKDGVREVF-EMATRAALQARRGKK-KSGCLVL |
P.E..R..ANR.GA.GYM..SA.K...G.REV..EM....A...R.GKK.KSGCLVL | |
Retrocopy | PKE<SRATANRRGALGYMLHSA<KANNGLREVW<EMVPGVATHPRHGKK<KSGCLVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 145 .85 RPM |
SRP012922_cerebellum | 0 .00 RPM | 46 .46 RPM |
SRP012922_heart | 0 .00 RPM | 27 .15 RPM |
SRP012922_kidney | 0 .00 RPM | 92 .00 RPM |
SRP012922_liver | 0 .00 RPM | 45 .98 RPM |
SRP012922_lung | 0 .00 RPM | 108 .89 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 39 .98 RPM |
SRP012922_spleen | 0 .00 RPM | 124 .42 RPM |