RetrogeneDB ID: | retro_ocun_854 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 16:11145745..11146142(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RHOA | ||
Ensembl ID: | ENSOCUG00000013323 | ||
Aliases: | None | ||
Description: | ras homolog family member A [Source:HGNC Symbol;Acc:667] |
Percent Identity: | 63.91 % |
Parental protein coverage: | 68.39 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHT |
WD.AGQEDYD..RPL.YPDTDV.L.CFSI..PDSLEN.PEK..PEV..FC..VPIILVGN.K...NDE.T | |
Retrocopy | WDMAGQEDYDHQRPLCYPDTDVLLFCFSIHNPDSLENMPEK*VPEVERFCIKVPIILVGNNKAVWNDEPT |
Parental | RRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF-EMATRAALQARRGKKKSG |
R.EL...KQEP.KP.EGR.MA.RI...GYMEC..KTKDGV..V..E.A..AAL.....K...G | |
Retrocopy | RQELVMIKQEPAKPAEGREMAKRIDTVGYMECAGKTKDGVGQVL>ETAAGAALSVKCRKEIFG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 110 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 165 .11 RPM |
SRP017611_liver | 0 .00 RPM | 67 .59 RPM |