RetrogeneDB ID: | retro_pcap_98 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | GeneScaffold_5983:27950..28330(-) | ||
Located in intron of: | ENSPCAG00000010026 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RHOA | ||
Ensembl ID: | ENSPCAG00000009699 | ||
Aliases: | None | ||
Description: | ras homolog family member A [Source:HGNC Symbol;Acc:667] |
Percent Identity: | 59.38 % |
Parental protein coverage: | 65.28 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLEN-IP-EKWTPEVKHFCPNVPIILVGNKKDLRN |
ALWDTAGQED.D.L.PLS..D..V.L..FSI.SP..L.N.IP.EK...EVK.FCPNVPI.L..NKKDL.N | |
Retrocopy | ALWDTAGQEDNDHLSPLSNQDINVTLIYFSISSPGGL*N>IP>EKQILEVKSFCPNVPITLAENKKDLQN |
Parental | DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQA |
DEH.R..LAK.KQE.VKP..G.........FG.ME...K.KD.V.EVFE.A....LQA | |
Retrocopy | DEHIRQKLAKLKQELVKPDKGQRDSKQDWCFGVMEWPTKIKDRVTEVFERAAKVSLQA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |