RetrogeneDB ID: | retro_ecab_162 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 1:53599166..53599718(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSECAG00000011547 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 68.09 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | KMVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGR |
KM..YSLD....TKS.KSR.S.L.VH..NT.ETAQA..GMHI.KA.KYLKDVTL..QCVPF..YNG.VG. | |
Retrocopy | KMICYSLDLADSTKSYKSRESKLHVHLENTCETAQAVRGMHI*KAIKYLKDVTL*NQCVPFCPYNGRVGK |
Parental | CAQAKQWGWTQ-GRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINP |
.AQAKQW.W...G.W.KKSAEFLLH.LKNA.SNA.LK..DVDSLVIE..QVNKA.KM...TYR.H.RI.P | |
Retrocopy | YAQAKQWDWIR<GTWLKKSAEFLLHVLKNAPSNAALKSSDVDSLVIEYFQVNKASKMCHHTYRTHARIAP |
Parental | YMSSPCHIEMILTEKEQ-IVPKPEE-EVAQKKKISQKKLKKQKLMARE |
...SPCHIE.ILTEKE....PK.EE.E..QKKKI.QKKLKKQKL...E | |
Retrocopy | CLNSPCHIEVILTEKEH<FFPKSEE<EFKQKKKIFQKKLKKQKLTVWE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 837 .99 RPM |
SRP021940_cerebellum | 0 .00 RPM | 238 .68 RPM |
SRP021940_embryo | 0 .05 RPM | 569 .09 RPM |
SRP021940_placental_villous | 0 .05 RPM | 338 .75 RPM |
SRP021940_synovial_membrane | 0 .03 RPM | 487 .80 RPM |
SRP021940_testis | 0 .06 RPM | 215 .62 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_490 |
Pongo abelii | retro_pabe_539 |