RetrogeneDB ID: | retro_ecab_331 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 15:55384343..55384689(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSECAG00000011547 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 63.56 % |
Parental protein coverage: | 62.7 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | VRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIR-KATKYLKDVTLKKQCVPFRRYNGGVGRC |
V.YS.DPE.PTKS.KSRG.NLRV.FKNTRET....K.MH.R.KA..YLK.VTL..Q.V..R.YNG.VGR. | |
Retrocopy | VPYSVDPEDPTKSFKSRGPNLRVLFKNTRETTLVTKDMHTR<KASGYLKGVTLQRQHVLSRCYNGRVGRA |
Parental | AQAKQWGWTQGRWP-KKSAEFLLHMLKNAESNAELKGLDVDSLVIEHI |
A..K..GWT.G..P...SAE.LLH...N.E..AEL.G.DVDSLVIEHI | |
Retrocopy | APGKLCGWTWGQGP<RRSAECLLHGIENEEGKAELSGSDVDSLVIEHI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 837 .99 RPM |
SRP021940_cerebellum | 0 .00 RPM | 238 .68 RPM |
SRP021940_embryo | 0 .00 RPM | 569 .09 RPM |
SRP021940_placental_villous | 0 .00 RPM | 338 .75 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 487 .80 RPM |
SRP021940_testis | 0 .06 RPM | 215 .62 RPM |