RetrogeneDB ID: | retro_ecab_584 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 22:6607576..6607987(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSECAG00000011547 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 72.54 % |
Parental protein coverage: | 75.14 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | KMVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLK-DVTLK-KQCVPFRRYNGGV |
K.V.YSLDPEN.TKSCKSR.SNL.VHFKNTRET....K.MHI.KATK.LK..VTL..KQ.VPF..YNGGV | |
Retrocopy | KTVCYSLDPENLTKSCKSRSSNLHVHFKNTRETV-FLKVMHI*KATKDLK<NVTLQ<KQRVPFCYYNGGV |
Parental | GRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVI-EHIQVNKAPKMRRRTYRAHGRI |
GRCAQAKQ.GWT.G.WPK.SAEFLLH.LKNAESNAELKGLD.DSLV..EH..VNK.P....RT.RA.... | |
Retrocopy | GRCAQAKQQGWTRGWWPKQSAEFLLHELKNAESNAELKGLDTDSLVL<EHSWVNKPPTIQHRTHRAPWQT |
Parental | NP |
NP | |
Retrocopy | NP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 837 .99 RPM |
SRP021940_cerebellum | 0 .00 RPM | 238 .68 RPM |
SRP021940_embryo | 0 .36 RPM | 569 .09 RPM |
SRP021940_placental_villous | 0 .10 RPM | 338 .75 RPM |
SRP021940_synovial_membrane | 0 .11 RPM | 487 .80 RPM |
SRP021940_testis | 0 .06 RPM | 215 .62 RPM |