RetrogeneDB ID: | retro_ecab_488 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 2:51057741..51058143(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSECAG00000011547 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 77.54 % |
Parental protein coverage: | 72.97 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRK-ATKYLKDVTLKKQCVPFRRYNGGVGR |
MV.YS.D.ENP.KSCKSRGS.L.VHFKNT.E.AQAIKGMHI.K.ATKYLKDVTL.K.CVP.RRYNGG.GR | |
Retrocopy | MVCYSFDTENPPKSCKSRGSDLCVHFKNTFEMAQAIKGMHIQK<ATKYLKDVTLQK*CVPCRRYNGGAGR |
Parental | CAQAKQWGWTQ-GRWPK-KSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGR |
.AQAKQWGWTQ.G..P..KSAEFLLHMLKN.ESNA.L.GLDVDSLVIEH.QV.K.P.MR.R.YRA.G. | |
Retrocopy | *AQAKQWGWTQ<GSVPQ<KSAEFLLHMLKNTESNADLTGLDVDSLVIEHMQVDKVPRMRFRPYRAAGQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 837 .99 RPM |
SRP021940_cerebellum | 0 .00 RPM | 238 .68 RPM |
SRP021940_embryo | 0 .00 RPM | 569 .09 RPM |
SRP021940_placental_villous | 0 .00 RPM | 338 .75 RPM |
SRP021940_synovial_membrane | 0 .05 RPM | 487 .80 RPM |
SRP021940_testis | 0 .00 RPM | 215 .62 RPM |
Species | RetrogeneDB ID |
---|---|
Sus scrofa | retro_sscr_403 |