RetrogeneDB ID: | retro_ecab_751 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 30:4270118..4270444(+) | ||
Located in intron of: | ENSECAG00000011513 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL17 | ||
Ensembl ID: | ENSECAG00000011547 | ||
Aliases: | None | ||
Description: | ribosomal protein L17 [Source:HGNC Symbol;Acc:10307] |
Percent Identity: | 69.37 % |
Parental protein coverage: | 58.92 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | VRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKAT-KYLKDVTLKKQCVPFRRYNGGVGRC |
V.YSLDPENPT.S.K...SNL.VHFKN..E.AQAIKG.H..KA..KYLKDVTL.KQCVP......G.GRC | |
Retrocopy | VCYSLDPENPTHSSKLTCSNLHVHFKNIPESAQAIKGTHMGKAI*KYLKDVTLQKQCVPLHCHRRGAGRC |
Parental | AQA-KQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVD |
..A.KQWGWT.G.WPK.S.EFLL.MLKNA..NAELKGLD.D | |
Retrocopy | TPA<KQWGWT*GQWPKMS-EFLLYMLKNAARNAELKGLDAD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .06 RPM | 837 .99 RPM |
SRP021940_cerebellum | 0 .00 RPM | 238 .68 RPM |
SRP021940_embryo | 0 .00 RPM | 569 .09 RPM |
SRP021940_placental_villous | 0 .00 RPM | 338 .75 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 487 .80 RPM |
SRP021940_testis | 0 .00 RPM | 215 .62 RPM |