RetrogeneDB ID: | retro_ecab_377 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 16:37386066..37386678(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL14 | ||
Ensembl ID: | ENSECAG00000026813 | ||
Aliases: | None | ||
Description: | ribosomal protein L14 [Source:HGNC Symbol;Acc:10305] |
Percent Identity: | 77.94 % |
Parental protein coverage: | 95.33 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | FVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSARQKYVRQ |
F.EVG.V.YVSFGPHAGKLVA.VDVIDQNR.LVDGPCTQVRRQAM.FK.MQLTDFIL.FPHSARQKY..Q | |
Retrocopy | FMEVGWVTYVSFGPHAGKLVATVDVIDQNRTLVDGPCTQVRRQAMSFKYMQLTDFIL*FPHSARQKYIQQ |
Parental | AWQKADINTKWAATRWAKKIEARERKPKMTDFDRYKVMKAKKMRNRIIKLEVRKLQKAALLKASPKKAPA |
AWQKADINT.WA.TRWAKK.EAR.RK.KMTDFD..KVMKAKKM.NRIIK.EVRK.QK..LLKASPKK..A | |
Retrocopy | AWQKADINTNWATTRWAKKMEARKRKAKMTDFDGFKVMKAKKMKNRIIKFEVRKPQKEGLLKASPKK*SA |
Parental | AKGAAATAAAKVPSKKTTTAGKKAPAQKAPAQKAAGQKAAPPKAQKGQKAPGQKTPAQKAPAPK |
AKGAAAT.AA.VP.KK.T..G.KAPA.K.PA.KAAGQK.AP.KAQ.GQ.AP.Q..PA.KA...K | |
Retrocopy | AKGAAATTAAEVPAKKMTAVGQKAPARKVPAKKAAGQKTAPLKAQNGQTAPAQRAPAPKASGKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 2 .07 RPM | 1213 .95 RPM |
SRP021940_cerebellum | 1 .30 RPM | 479 .28 RPM |
SRP021940_embryo | 1 .61 RPM | 666 .71 RPM |
SRP021940_placental_villous | 1 .78 RPM | 454 .55 RPM |
SRP021940_synovial_membrane | 1 .40 RPM | 506 .05 RPM |
SRP021940_testis | 11 .51 RPM | 136 .90 RPM |