RetrogeneDB ID: | retro_fcat_671 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:175507796..175508422(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL14 | ||
Ensembl ID: | ENSFCAG00000015655 | ||
Aliases: | None | ||
Description: | ribosomal protein L14 [Source:HGNC Symbol;Acc:10305] |
Percent Identity: | 73.33 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | VFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSARQK |
.F..F.EV..VAY.SFG.HAG..V.I.D.IDQ..ALVDGPC.QVRR..MPFKCM.LTDFILKFPHSAR.K | |
Retrocopy | MFKCFIEVNQVAYISFGLHAGRMVQIIDAIDQKGALVDGPCIQVRRYIMPFKCMELTDFILKFPHSARPK |
Parental | YVRQAWQKADINTKWAATRWAKKIEARERKAKMTDFDRYKVMKAKKMRNRIIKLEVRKLQKAALLKASPK |
YV.QAWQKAD...KWAA..W.KKI.ARERKAKMTDFD.YKVMKAKK.R.RIIKLEVRKL.KAA.L..SP. | |
Retrocopy | YVGQAWQKADTSRKWAAMGWVKKIKARERKAKMTDFDHYKVMKAKKRRKRIIKLEVRKLPKAAVLESSPR |
Parental | KAPAAKGAAAAAAAKVPAKKMAAAGKKAPAQKVPAPKAAGQKAAPPKAQKGQKAPAQKAPAP-KASGKKA |
..P.AK.AA...AAK.PAKK.AA.GKKA..QK..AP.AAGQKAAPPKA.KGQK..AQKAP.P.KASGKKA | |
Retrocopy | NVPTAKVAAGEVAAKFPAKKFAATGKKAAVQKISAP*AAGQKAAPPKAGKGQKSQAQKAPVP<KASGKKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 147 .37 RPM |
SRP017611_kidney | 0 .00 RPM | 624 .84 RPM |
SRP017611_liver | 0 .00 RPM | 277 .19 RPM |