RetrogeneDB ID: | retro_etel_2155 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_79384:1531..2078(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000016690 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000012894 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 62.05 % |
Parental protein coverage: | 91.04 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MVFRRFVEVGRVAYISFGPHAGKLVAIV-DVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSAR |
.VFR...EVG.VAYISF....GK.V..V.DV.DQ.RALVDGPC.QVR.QA.PF.CMQLTD.ILKFP.... | |
Retrocopy | IVFRCLLEVGPVAYISF----GKVVTLV<DVNDQTRALVDGPCAQVRTQAVPFECMQLTDVILKFPQCPA |
Parental | QK-YVRQAWQKADINTKWAATRWAKKIEAREKKAKMTDFDRFKVMKAKKMRNRLIKYEVKKLQRAALLKA |
.......AWQK....TKW.ATRWA.KIEA.E.KA..T.FD.FKV.KAKKMRN.LIKYEVKKLQRAALLKA | |
Retrocopy | EE<MSDKAWQKVAVRTKWEATRWAQKIEAGEEKAIRTGFDCFKVTKAKKMRNQLIKYEVKKLQRAALLKA |
Parental | SPKKASAAKGAAAAAAAKVPAKKGAAAATAGKKAPAQKAPAQKEKAAGQKAGPPK |
SP.KAS..KG...A...K.PA...AAA...G.K.PAQK..A...KA..Q....PK | |
Retrocopy | SPRKASLVKGTTGA---KAPATEVAAA---GTKPPAQKEKAGPAKAPAQETPTPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |