RetrogeneDB ID: | retro_fcat_1000 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:136320428..136320866(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL14 | ||
Ensembl ID: | ENSFCAG00000015655 | ||
Aliases: | None | ||
Description: | ribosomal protein L14 [Source:HGNC Symbol;Acc:10305] |
Percent Identity: | 82.88 % |
Parental protein coverage: | 69.86 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSARQK |
VFR...EVG.VAYV..GP.A.KLV.IV.V.DQNR.LVDGPCTQVRRQAMPFKCMQL.DFI..FPHSA..K | |
Retrocopy | VFRHLTEVGPVAYVYSGPRARKLVMIVGVTDQNRSLVDGPCTQVRRQAMPFKCMQLPDFITEFPHSALRK |
Parental | YVRQAWQKADINTKWAATRWAKKIEARERKAKMTDFDRYKVMKAKKMRNRIIKLEVRKLQKAALLKASPK |
YV.QAWQKADINTK.AATR..KKIEARERKAKMTDFDRY.VMKAKKMRN.IIKLEVRKLQKAALLKASPK | |
Retrocopy | YV*QAWQKADINTKRAATRRTKKIEARERKAKMTDFDRYEVMKAKKMRNGIIKLEVRKLQKAALLKASPK |
Parental | KAPAAK |
K..AAK | |
Retrocopy | KGAAAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 147 .37 RPM |
SRP017611_kidney | 0 .00 RPM | 624 .84 RPM |
SRP017611_liver | 0 .00 RPM | 277 .19 RPM |