RetrogeneDB ID:

retro_etel_1448

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:scaffold_267683:6124..6394(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL37A
Ensembl ID:ENSETEG00000014352
Aliases:None
Description:ribosomal protein L37a [Source:HGNC Symbol;Acc:10348]


Retrocopy-Parental alignment summary:






>retro_etel_1448
ATGGCCAAGCACACCAAGGTCGGGATGGTGGTTCAATAGGGGACCCATGAGGGTGGCTCCCTCAGGAAAGTGGTGAAGAA
AATGGAAATCAGTCAACAGCAACAGTACACTTGCTCCTTCTGCGGCAAAACCAACATGAAGAGATGGGCTGTGGGTACCT
GGCCCGGTGGTTCCTGCAGGACGACAGTAACTGGTGGTGCCTTGACCTGCACCACCACCTCTGCAGTCAGTCAGAAGACG
GAAGGAATCGAAAGACCAGAAGAAATGCAA

ORF - retro_etel_1448 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 61.54 %
Parental protein coverage: 97.83 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWT
MAK.TK.VG.V...GT..G.SLRK.VKK.EISQ...YTCSFCGKT.MKR.AVG.W..GSC..TV.GGA.T
RetrocopyMAKHTK-VGMVVQ*GTHEGGSLRKVVKKMEISQQQQYTCSFCGKTNMKRWAVGTWPGGSCRTTVTGGALT
ParentalYNTTSAVTVKS-AIRRLKELK
..TTSAV..K...I.R..E..
RetrocopyCTTTSAVSQKTEGIERPEEMQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_1448 was not experimentally validated.

Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 9 parental genes, and 78 retrocopies.

Species Parental gene accession Retrocopies number
Echinops telfairi ENSETEG00000014352 34 retrocopies
Gorilla gorilla ENSGGOG000000148275 retrocopies
Latimeria chalumnae ENSLACG000000115781 retrocopy
Macaca mulatta ENSMMUG0000001954411 retrocopies
Monodelphis domestica ENSMODG000000254859 retrocopies
Procavia capensis ENSPCAG000000068915 retrocopies
Petromyzon marinus ENSPMAG000000000011 retrocopy
Pongo abelii ENSPPYG000000258781 retrocopy
Tarsius syrichta ENSTSYG0000000425811 retrocopies



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