RetrogeneDB ID: | retro_fcat_1207 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:101148712..101149057(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000027669 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000032037 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.11 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGS-LICNVGAGGPA |
M.S.SEL.C.Y..LI.H..EV.VTE.KINALIKAAGVN.EPFWPGL.AKALA..N.G..LI.NVGAG.PA | |
Retrocopy | MVSLSELTCTYLTLIVHGYEVMVTEAKINALIKAAGVNIEPFWPGLLAKALASINTGA<LILNVGAGRPA |
Parental | PAAGAAPAG-GPAPSTTAA-PAE--EKKVEAKKEESEESDDDMGFGLFD |
PAA.AAPA..GPAPST.AA.PA...EKKVEAKKEESEESDDD..FG..D | |
Retrocopy | PAADAAPAK<GPAPSTRAA<PAAT*EKKVEAKKEESEESDDDIRFGFSD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 57 .04 RPM |
SRP017611_kidney | 0 .00 RPM | 269 .08 RPM |
SRP017611_liver | 0 .00 RPM | 111 .70 RPM |