RetrogeneDB ID: | retro_fcat_825 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:35343235..35343451(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000032037 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 61.84 % |
Parental protein coverage: | 64.04 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | CIYSALILHDDEVTVTE-DKINALIKAAGVNVEPFWPGLFAKALANVNI-GSLICNV-GAGGPAPAAGAA |
CIY..LILH.DEVTVTE.DK.N.LI.AA.V...PF.PGL.A.ALANVN..GS.IC.....GGPAPA...A | |
Retrocopy | CIYWPLILHNDEVTVTE<DKMNVLINAAKVSAGPF*PGLCAEALANVNM<GSFICSE<KGGGPAPAGNPA |
Parental | PAGGPA |
P....A | |
Retrocopy | PSTSAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 57 .04 RPM |
SRP017611_kidney | 0 .00 RPM | 269 .08 RPM |
SRP017611_liver | 0 .00 RPM | 111 .70 RPM |