RetrogeneDB ID: | retro_fcat_1797 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | F2:13008990..13009322(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000032037 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.52 % |
Parental protein coverage: | 97.37 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | VSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANV--NIGSLICNVGAGGPA-P |
.SEL.CIY.ALILH..EV...EDKINA.IKAAGVNV..FWPGLFAKALANV...IGSL.CNVGAGGP... | |
Retrocopy | LSELTCIYLALILHYPEVP--EDKINAFIKAAGVNVRHFWPGLFAKALANVHIHIGSLSCNVGAGGPSRV |
Parental | AAGAAPAGGPAPSTTAAPAEEKKVE-AKKEESEESDDDMGFGLFD |
AA.AAP..GPAP.TTA.PA.EKKV..AKKEESE.SDDDMGFGLFD | |
Retrocopy | AACAAPGSGPAPFTTAVPA-EKKVQ<AKKEESEQSDDDMGFGLFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 57 .04 RPM |
SRP017611_kidney | 0 .00 RPM | 269 .08 RPM |
SRP017611_liver | 0 .00 RPM | 111 .70 RPM |