RetrogeneDB ID: | retro_fcat_56 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:115204315..115204654(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000023045 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000032037 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.67 % |
Parental protein coverage: | 97.37 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ASVSELACIYSA---LILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGP |
ASV.ELA.IYS....L...DDEV.V.ED..NALIK..GVNVE.FWPGLFAK.LA.VNI......V...G. | |
Retrocopy | ASVWELAGIYSGLTGLTVQDDEVSVKEDEVNALIKTVGVNVESFWPGLFAKTLAHVNIVNIRSLVHKVG- |
Parental | APAAGAAPAGGPAPSTTAAPAEEKKVEAKKEESEESDDDMGFGL |
..A.G..PA.GPAPSTTAAP.EEKKVEAKKEESEESDD..GF.L | |
Retrocopy | --AGGSVPADGPAPSTTAAPTEEKKVEAKKEESEESDD-VGFSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 57 .04 RPM |
SRP017611_kidney | 0 .00 RPM | 269 .08 RPM |
SRP017611_liver | 0 .00 RPM | 111 .70 RPM |