RetrogeneDB ID: | retro_fcat_928 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:108757129..108757449(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000032037 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.91 % |
Parental protein coverage: | 99.12 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI-CNVGAGGPA |
MASV.E..CI.SALI.HDDEVTVTEDKINALI.AAG.NVEPF...LFAKAL.NVNIG.LI.CNV.A.G.A | |
Retrocopy | MASV*EFTCICSALIQHDDEVTVTEDKINALIQAAGINVEPF*LSLFAKALVNVNIGCLI<CNVRADGSA |
Parental | PAAGAAPAGGPAPSTTAAPAEEKKVEAKKEESEESDDDMGFGLF |
PA.G.A.....AP.......E.KK.E...EES.....DMGFGLF | |
Retrocopy | PAGGPASSTTAAPA-EENKVEAKKEES--EESDD---DMGFGLF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 57 .04 RPM |
SRP017611_kidney | 0 .00 RPM | 269 .08 RPM |
SRP017611_liver | 0 .00 RPM | 111 .70 RPM |