RetrogeneDB ID: | retro_fcat_1580 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D4:42258396..42258670(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000032037 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 60.87 % |
Parental protein coverage: | 79.82 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPA- |
.ASV.EL....S..ILH.D.V.VTE.KINALIK.AGV..EPFWPGL.AKALA...I..LIC.VGAGGPA. | |
Retrocopy | VASVWELISLCSGPILHSDDVMVTENKINALIKTAGVSLEPFWPGLSAKALASIDIRRLICSVGAGGPA> |
Parental | PAAGAAPAGGPAPSTTAAPAEE |
.A..AA..G.P.PS......EE | |
Retrocopy | AAGTAAAGGPPFPSWLPS*REE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 57 .04 RPM |
SRP017611_kidney | 0 .00 RPM | 269 .08 RPM |
SRP017611_liver | 0 .00 RPM | 111 .70 RPM |