RetrogeneDB ID: | retro_fcat_597 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:195732932..195733249(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000032037 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.64 % |
Parental protein coverage: | 94.74 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAP |
L....S.L.L...E.T.TE.K.NAL..AAG..VEPFW.GLFA.ALA.VNIGSL.C.VGAGGPAPAAGAAP | |
Retrocopy | LTWLHSVLNLQGGEMTPTE-KTNALSRAAGIDVEPFWLGLFAVALADVNIGSLSCSVGAGGPAPAAGAAP |
Parental | AGGPAPSTTAAPAEEKKVEAKK-EESEESDDDMGFGLFD |
AG.PAPSTTA.PAEEKK.EAKK.E..E.SD..MGF.LFD | |
Retrocopy | AGAPAPSTTATPAEEKKAEAKK<ESEE-SDGEMGFALFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .23 RPM | 57 .04 RPM |
SRP017611_kidney | 0 .82 RPM | 269 .08 RPM |
SRP017611_liver | 0 .20 RPM | 111 .70 RPM |