RetrogeneDB ID: | retro_fcat_1244 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:204056138..204056475(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000032037 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.5 % |
Parental protein coverage: | 98.25 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | SVSELACIYSALILHD-DEVTVTEDKINAL-IKAAGVNVEPFWP-GL-FAKALANVNIGSLICNVG-AGG |
S.SELACIY..LILHD..EV.V.EDKINAL.IKA.GVNVE.FW..GL.FA.ALANVN.GS.....G..GG | |
Retrocopy | SMSELACIYLTLILHD<HEVMVLEDKINAL<IKASGVNVETFWQVGL>FA*ALANVNMGSHMQYRG<VGG |
Parental | PAPAAGAAPAGGPAPSTTAAPAEEKKVEAKKEESEESDDDMGFGLFD |
P.PAAG.A.A.GP.PSTTAAP.EEKKVE.KKEESEESDDDM.F.LFD | |
Retrocopy | PTPAAGSASARGPSPSTTAAPTEEKKVETKKEESEESDDDMSFVLFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 57 .04 RPM |
SRP017611_kidney | 0 .00 RPM | 269 .08 RPM |
SRP017611_liver | 0 .00 RPM | 111 .70 RPM |