RetrogeneDB ID: | retro_fcat_1213 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:135699992..135700380(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL18A | ||
Ensembl ID: | ENSFCAG00000007518 | ||
Aliases: | None | ||
Description: | ribosomal protein L18a [Source:HGNC Symbol;Acc:10311] |
Percent Identity: | 66.92 % |
Parental protein coverage: | 73.3 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 1 |
Parental | FVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGAR |
FVS.LKKM.KSS.E.VYCGQVFEK.P..VKN..I.L..D..S.T.NMY.....L.TA..VTQCY..MG.. | |
Retrocopy | FVS*LKKMSKSSEEMVYCGQVFEKPPWKVKNCSI*LC*DFCSSTYNMYWKSWNLPTADVVTQCY*NMGNQ |
Parental | HR-ARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTF |
H..A.AHSIQIMK..EIAASKCR..AVKQ.HD.KIKFPLPH.VL..QHKP..TTKRP.TF | |
Retrocopy | HK>AWAHSIQIMKM*EIAASKCR*VAVKQLHDFKIKFPLPHQVLHQQHKPCLTTKRPKTF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 25 .48 RPM |
SRP017611_kidney | 0 .00 RPM | 103 .88 RPM |
SRP017611_liver | 0 .10 RPM | 56 .91 RPM |