RetrogeneDB ID:

retro_ttru_151

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_1392:82715..83024(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL18A
Ensembl ID:ENSTTRG00000008977
Aliases:None
Description:ribosomal protein L18a [Source:HGNC Symbol;Acc:10311]


Retrocopy-Parental alignment summary:






>retro_ttru_151
AGGCTGAAGAACTTCTGCATCTGGTTGCACTATGACTCCCGCAGAGGCCCCCACAACATGTACCGGCAGTACCGGGACCT
GACCGCAGCCGGCACCATCACCCAATGCTACCGAGACACGGGCACCCGGCGCCTTGCCCGGGCCCACTGGATCCAGATCA
TGGAGGTAGAGGAGATCGCAGCCAGCAAGTGCCGCCGAGCAGCAGCCAAGCAGTTCCACGACTCCAAGATCAAGTTCCCA
CTGCCCCACCAGGTCCTCTGTCACCAGCACAAGCCACACTTCACCACCAAGAGGCCCAACACCTTCTTT

ORF - retro_ttru_151 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 79.61 %
Parental protein coverage: 60.59 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVK
R.KNF.IWL.YDSR.G.HNMYR.YRDLT.AG..TQCYRD.G.R..ARAH.IQIM.VEEIAASKCRR.A.K
RetrocopyRLKNFCIWLHYDSRRGPHNMYRQYRDLTAAGTITQCYRDTGTRRLARAHWIQIMEVEEIAASKCRRAAAK
ParentalQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF
QFHDSKIKFPLPH.VL..QHKP.FTTKRPNTFF
RetrocopyQFHDSKIKFPLPHQVLCHQHKPHFTTKRPNTFF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_151 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_151 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 18 parental genes, and 70 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000031251 retrocopy
Bos taurus ENSBTAG000000158315 retrocopies
Canis familiaris ENSCAFG000000151221 retrocopy
Callithrix jacchus ENSCJAG000000140067 retrocopies
Cavia porcellus ENSCPOG000000152051 retrocopy
Equus caballus ENSECAG000000152581 retrocopy
Felis catus ENSFCAG000000075186 retrocopies
Gorilla gorilla ENSGGOG000000028708 retrocopies
Macropus eugenii ENSMEUG000000032282 retrocopies
Macaca mulatta ENSMMUG000000288446 retrocopies
Monodelphis domestica ENSMODG000000191672 retrocopies
Mustela putorius furoENSMPUG000000157864 retrocopies
Pongo abelii ENSPPYG0000000972510 retrocopies
Pan troglodytes ENSPTRG000000106863 retrocopies
Pteropus vampyrus ENSPVAG000000173786 retrocopies
Sarcophilus harrisii ENSSHAG000000004063 retrocopies
Sus scrofa ENSSSCG000000138892 retrocopies
Tursiops truncatus ENSTTRG00000008977 2 retrocopies
retro_ttru_151 , retro_ttru_508,



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