RetrogeneDB ID: | retro_fcat_1716 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | E2:47518437..47518817(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL18A | ||
Ensembl ID: | ENSFCAG00000007518 | ||
Aliases: | None | ||
Description: | ribosomal protein L18a [Source:HGNC Symbol;Acc:10311] |
Percent Identity: | 54.55 % |
Parental protein coverage: | 74.43 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | TLREYKVVGRCLPTPKCRT-PPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLR |
T.R.YK.V..CL.TPKC...P.LY.M.IFAPNHV.AKS.FWYF.SQLKK...SS...VY..QVF...PL. | |
Retrocopy | TARIYKMVEYCLLTPKCHS<PALYHMPIFAPNHVTAKSCFWYFLSQLKK---SSRKVVYWQQVFKIPPLQ |
Parental | VKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASK |
..N.G..L.Y.S...TH.....YRDL.T...VTQ.Y.DMGA.H....H.I.IM..EE..AS. | |
Retrocopy | LHNSGT*LWYNSCNDTHICWM-YRDLATVDNVTQGYHDMGAQHSTQSHTIHIMRMEEFMASQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 25 .48 RPM |
SRP017611_kidney | 0 .00 RPM | 103 .88 RPM |
SRP017611_liver | 0 .00 RPM | 56 .91 RPM |